com.fasteasytrade.JRandTest.Tests
Class OverlappingPairsSparseOccupancy

java.lang.Object
  com.fasteasytrade.JRandTest.Tests.Base
      com.fasteasytrade.JRandTest.Tests.OverlappingPairsSparseOccupancy

Direct Known Subclasses:

DNA, OverlappingQuadruplesSparseOccupancy

public class OverlappingPairsSparseOccupancy

extends Base

OverlappingPairsSparseOccupancy (OPSO) from DieHard

Author:

Zur Aougav

Nested Class Summary

Nested classes inherited from class com.fasteasytrade.JRandTest.Tests.Base

Base.point

Field Summary

int	bits_pl
(package private) int	bits_pw
(package private) int	dim
(package private) int	flag
(package private) int	ltrs_pw
(package private) int	maskltr
(package private) double	mean
(package private) int	no_tests
double	std
String	testName The algorithms OPSO, OQSO and DNA use 3 parameters set in setParameters.
(package private) int	wd

Fields inherited from class com.fasteasytrade.JRandTest.Tests.Base

df, DIM, PI, rs, UNIMAX, vecOutputDestinations

Constructor Summary

OverlappingPairsSparseOccupancy()

Method Summary

int	get_w(int rt) get a word from specific bits
void	help() help method to be implemented by each test class.
void	setParameters() Different parameters set by 3 algorithms: OPSO, OQSO and DNA.
void	test(String filename) test method to be implemented by each test class.

Methods inherited from class com.fasteasytrade.JRandTest.Tests.Base

ABS, ABS, addOutputDestination, avg, chisq, Chisq, chitest, closeInputStream, d4, d4d_d, d4d, exp, exp, G, isOpen, KStest, log, MAX, MAX, MIN, MIN, openInputStream, phi, Phi, Poisson_fit, Poisson, pow, printf, puts, qsort, qsort, qsort, r2_double, read32BitsAsDouble, readByte, readInt, readLong, registerInput, removeOutputDestination, showbit, SIGN, SIGN, sqrt, sqrt, stdev, uni

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

bits_pw

final int bits_pw

See Also:

Constant Field Values

mean

final double mean

dim

final int dim

no_tests

final int no_tests

See Also:

Constant Field Values

testName

public String testName

The algorithms OPSO, OQSO and DNA use 3 parameters set in setParameters.

bits_pl

public int bits_pl

std

public double std

flag

int flag

ltrs_pw

int ltrs_pw

wd

int wd

maskltr

int maskltr

Constructor Detail

OverlappingPairsSparseOccupancy

public OverlappingPairsSparseOccupancy()

Method Detail

help

public void help()

Description copied from class: Base

help method to be implemented by each test class.

Overrides:

help in class Base

See Also:

Base.help()

setParameters

public void setParameters()

Different parameters set by 3 algorithms: OPSO, OQSO and DNA.

test

public void test(String filename)

Description copied from class: Base

test method to be implemented by each test class.

Overrides:

test in class Base

Parameters:

filename - is the filename to be read or the algorithm name.

See Also:

Base.test(java.lang.String)

get_w

public int get_w(int rt)

get a word from specific bits